Package: survHC 0.1.0
survHC: Higher Criticism Tests for Non-Proportional Hazard Deviations
Implements omnibus tests for comparing two right-censored survival samples that are powerful against sparse departures from equal hazards, where the hazard difference is concentrated in a small and a priori unknown subset of the follow-up. Exact hypergeometric p-values are computed for each time interval and aggregated with the Higher Criticism statistic of Donoho and Jin (2004) <doi:10.1214/009053604000000265>, or alternatively with the Berk-Jones, Fisher or minimum-p statistics. Global p-values are obtained by permuting group labels, and the intervals driving a detection can be recovered for diagnostic plotting. Tests accept either two samples as vectors or the usual survival formula. The method is described in Kipnis, Galili and Yakhini (2026) <doi:10.1093/biomet/asaf075>, and the companion application note is Kipnis, Galili and Yakhini (2026) <doi:10.48550/arXiv.2610.07268>.
Authors:
survHC_0.1.0.tar.gz
survHC_0.1.0.zip(r-4.7-any)survHC_0.1.0.zip(r-4.6-any)survHC_0.1.0.zip(r-4.5-any)
survHC_0.1.0.tgz(r-4.6-any)survHC_0.1.0.tgz(r-4.5-any)
survHC_0.1.0.tar.gz(r-4.7-any)survHC_0.1.0.tar.gz(r-4.6-any)
survHC_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
survHC/json (API)
| # Install 'survHC' in R: |
| install.packages('survHC', repos = c('https://alonkipnis.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/alonkipnis/lifelines-hc/issues
Last updated from:0ceba6afe3. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 87 | ||
| source / vignettes | OK | 312 | ||
| linux-release | OK | 110 | ||
| macos-release | OK | 174 | ||
| macos-oldrel | OK | 125 | ||
| windows-devel | OK | 65 | ||
| windows-release | OK | 110 | ||
| windows-oldrel | OK | 46 | ||
| wasm-release | OK | 94 |
Exports:berk_jones_testevent_pvaluesfisher_combination_testhigher_criticism_testmin_p_testplot_pvalue_profilesuspected_deviations
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Berk-Jones test for non-proportional hazard deviations | berk_jones_test berk_jones_test.default berk_jones_test.formula |
| Per-interval hypergeometric p-values | event_pvalues event_pvalues.default event_pvalues.formula |
| Fisher combination test for non-proportional hazard deviations | fisher_combination_test fisher_combination_test.default fisher_combination_test.formula |
| Higher Criticism test for non-proportional hazard deviations | higher_criticism_test higher_criticism_test.default higher_criticism_test.formula |
| Minimum-p test for non-proportional hazard deviations | min_p_test min_p_test.default min_p_test.formula |
| Plot the per-interval p-value profile | plot_pvalue_profile plot_pvalue_profile.default plot_pvalue_profile.formula |
| Intervals with suspected non-proportional hazard deviations | suspected_deviations suspected_deviations.default suspected_deviations.formula |
